References

Abdurashidova, G.; Deganuto, M.; Klima, R.; Riva, S.; Biamonti, G.; Giacca, M. and Falaschi, A. (2000): Start sites of bidirectional DNA synthesis at the human lamin B2 origin, Science 287 [5460], pp.2023-6. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10720330

Acton, T. B.; Zhong, H. and Vershon, A. K. (1997): DNA-binding specificity of Mcm1: operator mutations that alter DNA-bending and transcriptional activities by a MADS box protein, Mol Cell Biol 17 [4], pp.1881-9. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9121436

Aladjem, M. I.; Rodewald, L. W.; Kolman, J. L. and Wahl, G. M. (1998): Genetic dissection of a mammalian replicator in the human beta-globin locus, Science 281 [5379], pp.1005-9. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9703500

Alexiadis, V.; Varga-Weisz, P. D.; Bonte, E.; Becker, P. B. and Gruss, C. (1998): In vitro chromatin remodelling by chromatin accessibility complex (CHRAC) at the SV40 origin of DNA replication, Embo J 17 [12], pp.3428-38. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9628878

Aparicio, J. G.; Viggiani, C. J.; Gibson, D. G. and Aparicio, O. M. (2004): The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomyces cerevisiae, Mol Cell Biol 24 [11], pp.4769-80. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15143171

Aparicio, O. M.; Stout, A. M. and Bell, S. P. (1999): Differential assembly of Cdc45p and DNA polymerases at early and late origins of DNA replication, Proc Natl Acad Sci U S A 96 [16], pp.9130-5. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10430907

Aparicio, O. M.; Weinstein, D. M. and Bell, S. P. (1997): Components and dynamics of DNA replication complexes in S. cerevisiae: redistribution of MCM proteins and Cdc45p during S phase, Cell 91 [1], pp.59-69. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9335335

Aravind, L. and Landsman, D. (1998): AT-hook motifs identified in a wide variety of DNA-binding proteins, Nucleic Acids Res 26 [19], pp.4413-21. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9742243

Beall, E. L.; Manak, J. R.; Zhou, S.; Bell, M.; Lipsick, J. S. and Botchan, M. R. (2002): Role for a Drosophila Myb-containing protein complex in site-specific DNA replication, Nature 420 [6917], pp.833-7. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12490953

Becker, P. B. and Horz, W. (2002): ATP-dependent nucleosome remodeling, Annu Rev Biochem 71, pp.247-73. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12045097

Bedalov, A.; Hirao, M.; Posakony, J.; Nelson, M. and Simon, J. A. (2003): NAD+-dependent deacetylase Hst1p controls biosynthesis and cellular NAD+ levels in Saccharomyces cerevisiae, Mol Cell Biol 23 [19], pp.7044-54. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12972620

Bell, S. P. and Dutta, A. (2002): DNA replication in eukaryotic cells, Annu Rev Biochem 71, pp.333-74. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12045100

Bell, S. P. and Stillman, B. (1992): ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex, Nature 357 [6374], pp.128-34. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1579162

Bi, X. (2002): Domains of gene silencing near the left end of chromosome III in Saccharomyces cerevisiae, Genetics 160 [4], pp.1401-7. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11973296

Bi, X.; Braunstein, M.; Shei, G. J. and Broach, J. R. (1999): The yeast HML I silencer defines a heterochromatin domain boundary by directional establishment of silencing, Proc Natl Acad Sci U S A 96 [21], pp.11934-9. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10518554

Bird, A. (2002): DNA methylation patterns and epigenetic memory, Genes Dev 16, pp.6-21.

Brachmann, C. B.; Sherman, J. M.; Devine, S. E.; Cameron, E. E.; Pillus, L. and Boeke, J. D. (1995): The SIR2 gene family, conserved from bacteria to humans, functions in silencing, cell cycle progression, and chromosome stability, Genes Dev 9 [23], pp.2888-902. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=7498786

Brand, A. H.; Breeden, L.; Abraham, J.; Sternglanz, R. and Nasmyth, K. (1985): Characterization of a "silencer" in yeast: a DNA sequence with properties opposite to those of a transcriptional enhancer, Cell 41 [1], pp.41-8. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=3888409

Breier, A. M.; Chatterji, S. and Cozzarelli, N. R. (2004): Prediction of Saccharomyces cerevisiae replication origins, Genome Biol 5 [4], p.R22. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15059255

Brewer, B. J. (1994): Intergenic DNA and the sequence requirements for replication initiation in eukaryotes, Curr Opin Genet Dev 4 [2], pp.196-202. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8032196

Broach, J. R.; Li, Y. Y.; Feldman, J.; Jayaram, M.; Abraham, J.; Nasmyth, K. A. and Hicks, J. B. (1983): Localization and sequence analysis of yeast origins of DNA replication, Cold Spring Harb Symp Quant Biol 47 Pt 2, pp.1165-73. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=6345070

Brown, J. L.; Mucci, D.; Whiteley, M.; Dirksen, M. L. and Kassis, J. A. (1998): The Drosophila Polycomb group gene pleiohomeotic encodes a DNA binding protein with homology to the transcription factor YY1, Mol Cell 1 [7], pp.1057-64. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9651589

Burke, T. W.; Cook, J. G.; Asano, M. and Nevins, J. R. (2001): Replication factors MCM2 and ORC1 interact with the histone acetyltransferase HBO1, J Biol Chem 276 [18], pp.15397-408. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11278932

Callan, H. G. (1974): DNA replication in the chromosomes of eukaryotes, Cold Spring Harb Symp Quant Biol 38, pp.195-203. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=4598637

Celniker, S. E.; Sweder, K.; Srienc, F.; Bailey, J. E. and Campbell, J. L. (1984): Deletion mutations affecting autonomously replicating sequence ARS1 of Saccharomyces cerevisiae, Mol Cell Biol 4 [11], pp.2455-66. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=6392851

Chang, V. K.; Donato, J. J.; Chan, C. S. and Tye, B. K. (2004): Mcm1 promotes replication initiation by binding specific elements at replication origins, Mol Cell Biol 24 [14], pp.6514-24. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15226450

Chi, M. H. and Shore, D. (1996): SUM1-1, a dominant suppressor of SIR mutations in Saccharomyces cerevisiae, increases transcriptional silencing at telomeres and HM mating-type loci and decreases chromosome stability, Mol Cell Biol 16 [8], pp.4281-94. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8754829

Chow, J. C. and Brown, C. J. (2003): Forming facultative heterochromatin: silencing of an X chromosome in mammalian females, Cell Mol Life Sci 60 [12], pp.2586-603. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14685685

Chu, S.; DeRisi, J.; Eisen, M.; Mulholland, J.; Botstein, D.; Brown, P. O. and Herskowitz, I. (1998): The transcriptional program of sporulation in budding yeast, Science 282 [5389], pp.699-705. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9784122

Clyne, R. K. and Kelly, T. J. (1995): Genetic analysis of an ARS element from the fission yeast Schizosaccharomyces pombe, Embo J 14 [24], pp.6348-57. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8557055

Cockell, M.; Palladino, F.; Laroche, T.; Kyrion, G.; Liu, C.; Lustig, A. J. and Gasser, S. M. (1995): The carboxy termini of Sir4 and Rap1 affect Sir3 localization: evidence for a multicomponent complex required for yeast telomeric silencing, J Cell Biol 129 [4], pp.909-24. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=7744964

Corona, D. F.; Clapier, C. R.; Becker, P. B. and Tamkun, J. W. (2002): Modulation of ISWI function by site-specific histone acetylation, EMBO Rep 3 [3], pp.242-7. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11882543

Cosgrove, A. J.; Nieduszynski, C. A. and Donaldson, A. D. (2002): Ku complex controls the replication time of DNA in telomere regions, Genes Dev 16 [19], pp.2485-90. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12368259

Cuthbert, G. L.; Daujat, S.; Snowden, A. W.; Erdjument-Bromage, H.; Hagiwara, T.; Yamada, M.; Schneider, R.; Gregory, P. D.; Tempst, P.; Bannister, A. J. and Kouzarides, T. (2004): Histone deimination antagonizes arginine methylation, Cell 118 [5], pp.545-53. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15339660

Derbyshire, M. K.; Weinstock, K. G. and Strathern, J. N. (1996): HST1, a new member of the SIR2 family of genes, Yeast 12 [7], pp.631-40. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8810037

Dietrich, F. S.; Voegeli, S.; Brachat, S.; Lerch, A.; Gates, K.; Steiner, S.; Mohr, C.; Pohlmann, R.; Luedi, P.; Choi, S.; Wing, R. A.; Flavier, A.; Gaffney, T. D. and Philippsen, P. (2004): The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome, Science 304 [5668], pp.304-7. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15001715

Diffley, J. F. and Cocker, J. H. (1992): Protein-DNA interactions at a yeast replication origin, Nature 357 [6374], pp.169-72. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1579168

Diffley, J. F.; Cocker, J. H.; Dowell, S. J. and Rowley, A. (1994): Two steps in the assembly of complexes at yeast replication origins in vivo, Cell 78 [2], pp.303-16. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8044842

Diffley, J. F. and Stillman, B. (1988): Purification of a yeast protein that binds to origins of DNA replication and a transcriptional silencer, Proc Natl Acad Sci U S A 85 [7], pp.2120-4. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=3281162

Dijkwel, P. A.; Wang, S. and Hamlin, J. L. (2002): Initiation sites are distributed at frequent intervals in the Chinese hamster dihydrofolate reductase origin of replication but are used with very different efficiencies, Mol Cell Biol 22 [9], pp.3053-65. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11940663

Dillin, A. and Rine, J. (1997): Separable functions of ORC5 in replication initiation and silencing in Saccharomyces cerevisiae, Genetics 147 [3], pp.1053-62. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9383052

Donze, D.; Adams, C. R.; Rine, J. and Kamakaka, R. T. (1999): The boundaries of the silenced HMR domain in Saccharomyces cerevisiae, Genes Dev 13 [6], pp.698-708. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10090726

Drury, L. S.; Perkins, G. and Diffley, J. F. (2000): The cyclin-dependent kinase Cdc28p regulates distinct modes of Cdc6p proteolysis during the budding yeast cell cycle, Curr Biol 10 [5], pp.231-40. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10712901

Dubey, D. D.; Davis, L. R.; Greenfeder, S. A.; Ong, L. Y.; Zhu, J. G.; Broach, J. R.; Newlon, C. S. and Huberman, J. A. (1991): Evidence suggesting that the ARS elements associated with silencers of the yeast mating-type locus HML do not function as chromosomal DNA replication origins, Mol Cell Biol 11 [10], pp.5346-55. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1922050

Duncker, B. P.; Shimada, K.; Tsai-Pflugfelder, M.; Pasero, P. and Gasser, S. M. (2002): An N-terminal domain of Dbf4p mediates interaction with both origin recognition complex (ORC) and Rad53p and can deregulate late origin firing, Proc Natl Acad Sci U S A 99 [25], pp.16087-92. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12441400

Ehrenhofer-Murray, A. E.; Rivier, D. H. and Rine, J. (1997): The role of Sas2, an acetyltransferase homologue of Saccharomyces cerevisiae, in silencing and ORC function, Genetics 145 [4], pp.923-34. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9093847

Eisenberg, S.; Civalier, C. and Tye, B. K. (1988): Specific interaction between a Saccharomyces cerevisiae protein and a DNA element associated with certain autonomously replicating sequences, Proc Natl Acad Sci U S A 85 [3], pp.743-6. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=3277180

Fangman, W. L. and Brewer, B. J. (1991): Activation of replication origins within yeast chromosomes, Annu Rev Cell Biol 7, pp.375-402. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1809350

Feldman, J.B.; Hicks, J. B. and Broach, J. R. (1984): Identification of the sites required for repression of a silent mating type locus in yeast, J Mol Biol 178, pp.815-34.

Ferguson, B. M.; Brewer, B. J.; Reynolds, A. E. and Fangman, W. L. (1991): A yeast origin of replication is activated late in S phase, Cell 65 [3], pp.507-15. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=2018976

Flanagan, J. F. and Peterson, C. L. (1999): A role for the yeast SWI/SNF complex in DNA replication, Nucleic Acids Res 27 [9], pp.2022-8. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10198436

Foss, M.; McNally, F. J.; Laurenson, P. and Rine, J. (1993): Origin recognition complex (ORC) in transcriptional silencing and DNA replication in S. cerevisiae, Science 262 [5141], pp.1838-44. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8266071

Fox, C. A.; Loo, S.; Dillin, A. and Rine, J. (1995): The origin recognition complex has essential functions in transcriptional silencing and chromosomal replication, Genes Dev 9 [8], pp.911-24. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=7774809

Friedman, K. L.; Diller, J. D.; Ferguson, B. M.; Nyland, S. V.; Brewer, B. J. and Fangman, W. L. (1996): Multiple determinants controlling activation of yeast replication origins late in S phase, Genes Dev 10 [13], pp.1595-607. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8682291

Geissenhoner, A.; Weise, C. and Ehrenhofer-Murray, A. E. (2004): Dependence of ORC silencing function on NatA-mediated Nalpha acetylation in Saccharomyces cerevisiae, Mol Cell Biol 24 [23], pp.10300-12. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15542839

Gilbert, D. M. (2001): Making sense of eukaryotic DNA replication origins, Science 294 [5540], pp.96-100. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11588251

Gilbert, D.M. (2001): Nuclear position leaves its mark on replication timing, J Cell Biol 152, pp.F11-F15.

Gilson, E.; Roberge, M.; Giraldo, R.; Rhodes, D. and Gasser, S. M. (1993): Distortion of the DNA double helix by RAP1 at silencers and multiple telomeric binding sites, J Mol Biol 231 [2], pp.293-310. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8510148

Grewal, S. I. and Moazed, D. (2003): Heterochromatin and epigenetic control of gene expression, Science 301 [5634], pp.798-802. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12907790

Grunweller, A. and Ehrenhofer-Murray, A. E. (2002): A novel yeast silencer. the 2mu origin of Saccharomyces cerevisiae has HST3-, MIG1- and SIR-dependent silencing activity, Genetics 162 [1], pp.59-71. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12242223

Halfter, H.; Kavety, B.; Vandekerckhove, J.; Kiefer, F. and Gallwitz, D. (1989): Sequence, expression and mutational analysis of BAF1, a transcriptional activator and ARS1-binding protein of the yeast Saccharomyces cerevisiae, Embo J 8 [13], pp.4265-72. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=2686983

Hecht, A.; Strahl-Bolsinger, S. and Grunstein, M. (1996): Spreading of transcriptional repressor SIR3 from telomeric heterochromatin, Nature 383 [6595], pp.92-6. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8779721

Heitz, E. (1928): Das Heterochromatin der Moose, Jb Wiss Bot [69], pp.728-818.

Hendrich, B. D. and Willard, H. F. (1995): Epigenetic regulation of gene expression: the effect of altered chromatin structure from yeast to mammals, Hum Mol Genet 4 Spec No, pp.1765-77. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8541877

Herskowitz, I.; Rine, J. and Strathern, J. N. (1992): Mating-type determination and mating-type interconversion in Saccharomyces cerevisiae., Jones, E.W. ; Pringle, J.R. and Broach, J. R., Eds, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.

Heun, P.; Laroche, T.; Raghuraman, M. K. and Gasser, S. M. (2001): The positioning and dynamics of origins of replication in the budding yeast nucleus, J Cell Biol 152 [2], pp.385-400. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11266454

Hirschhorn, J. N.; Brown, S. A.; Clark, C. D. and Winston, F. (1992): Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure, Genes Dev 6 [12A], pp.2288-98. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1459453

Hoppe, G.J.; Tanny, J.C.; Rudner, A.D.; Gerber, S.A.; Danaie, S.; Gygi, S.P. and Moazed, D. (2002): Steps in assembly of silent chromatin in yeast: Sir3-independent binding of a Sir2/Sir4 complex to silencers and role for Sir2-dependent deacetylation, Mol Cell Biol 22, pp.4167-4180.

Huang, D. W.; Fanti, L.; Pak, D. T.; Botchan, M. R.; Pimpinelli, S. and Kellum, R. (1998): Distinct cytoplasmic and nuclear fractions of Drosophila heterochromatin protein 1: their phosphorylation levels and associations with origin recognition complex proteins, J Cell Biol 142 [2], pp.307-18. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9679132

Huang, R. Y. and Kowalski, D. (1996): Multiple DNA elements in ARS305 determine replication origin activity in a yeast chromosome, Nucleic Acids Res 24 [5], pp.816-23. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8600446

Iizuka, M. and Stillman, B. (1999): Histone acetyltransferase HBO1 interacts with the ORC1 subunit of the human initiator protein, J Biol Chem 274 [33], pp.23027-34. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10438470

Imai, S.; Armstrong, C. M.; Kaeberlein, M. and Guarente, L. (2000): Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase, Nature 403 [6771], pp.795-800. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10693811

Ina, S.; Sasaki, T.; Yokota, Y. and Shinomiya, T. (2001): A broad replication origin of Drosophila melanogaster, oriDalpha, consists of AT-rich multiple discrete initiation sites, Chromosoma 109 [8], pp.551-64. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11305788

Ito, H.; Fukuda, Y.; Murata, K. and Kimura, A. (1983): Transformation of intact yeast cells treated with alkali cations, J Bacteriol 153 [1], pp.163-8. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=6336730

Jenuwein, T. and Allis, C. D. (2001): Translating the histone code, Science 293 [5532], pp.1074-80. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11498575

Kadosh, D. and Struhl, K. (1997): Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deacetylase to target promoters, Cell 89 [3], pp.365-71. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9150136

Kerrigan, L. A.; Croston, G. E.; Lira, L. M. and Kadonaga, J. T. (1991): Sequence-specific transcriptional antirepression of the Drosophila Kruppel gene by the GAGA factor, J Biol Chem 266 [1], pp.574-82. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1985916

Kimmerly, W.; Buchman, A.; Kornberg, R. and Rine, J. (1988): Roles of two DNA-binding factors in replication, segregation and transcriptional repression mediated by a yeast silencer, Embo J 7 [7], pp.2241-53. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=3046937

Kimura, A.; Umehara, T. and Horikoshi, M. (2002): Chromosomal gradient of histone acetylation established by Sas2p and Sir2p functions as a shield against gene silencing, Nat Genet 32 [3], pp.370-7. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12410229

Klar, A. J.; Kakar, S. N.; Ivy, J. M.; Hicks, J. B.; Livi, G. P. and Miglio, L. M. (1985): SUM1, an apparent positive regulator of the cryptic mating-type loci in Saccharomyces cerevisiae, Genetics 111 [4], pp.745-58. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=3905506

Klebe, R. J.; Harriss, J. V.; Sharp, Z. D. and Douglas, M. G. (1983): A general method for polyethylene-glycol-induced genetic transformation of bacteria and yeast, Gene 25 [2-3], pp.333-41. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=6363214

Kurdistani, S. K. and Grunstein, M. (2003): In vivo protein-protein and protein-DNA crosslinking for genomewide binding microarray, Methods 31 [1], pp.90-5. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12893178

Labib, K.; Diffley, J. F. and Kearsey, S. E. (1999): G1-phase and B-type cyclins exclude the DNA-replication factor Mcm4 from the nucleus, Nat Cell Biol 1 [7], pp.415-22. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10559985

Laemmli, U. K. (1970): Cleavage of structural proteins during the assembly of the head of bacteriophage T4, Nature 227 [259], pp.680-5. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=5432063

Laroche, T.; Martin, S. G.; Gotta, M.; Gorham, H. C.; Pryde, F. E.; Louis, E. J. and Gasser, S. M. (1998): Mutation of yeast Ku genes disrupts the subnuclear organization of telomeres, Curr Biol 8 [11], pp.653-6. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9635192

Laurenson, P. and Rine, J. (1991): SUM1-1: a suppressor of silencing defects in Saccharomyces cerevisiae, Genetics 129 [3], pp.685-96. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1752414

Laybourn, P. J. and Kadonaga, J. T. (1991): Role of nucleosomal cores and histone H1 in regulation of transcription by RNA polymerase II, Science 254 [5029], pp.238-45. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1718039

Lee, D. G. and Bell, S. P. (1997): Architecture of the yeast origin recognition complex bound to origins of DNA replication, Mol Cell Biol 17 [12], pp.7159-68. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9372948

Lee, D.; Sohn, H.; Kalpana, G. V. and Choe, J. (1999): Interaction of E1 and hSNF5 proteins stimulates replication of human papillomavirus DNA, Nature 399 [6735], pp.487-91. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10365963

Lee, T. I.; Rinaldi, N. J.; Robert, F.; Odom, D. T.; Bar-Joseph, Z.; Gerber, G. K.; Hannett, N. M.; Harbison, C. T.; Thompson, C. M.; Simon, I.; Zeitlinger, J.; Jennings, E. G.; Murray, H. L.; Gordon, D. B.; Ren, B.; Wyrick, J. J.; Tagne, J. B.; Volkert, T. L.; Fraenkel, E.; Gifford, D. K. and Young, R. A. (2002): Transcriptional regulatory networks in Saccharomyces cerevisiae, Science 298 [5594], pp.799-804. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12399584

Lei, M. and Tye, B. K. (2001): Initiating DNA synthesis: from recruiting to activating the MCM complex, J Cell Sci 114 [Pt 8], pp.1447-54. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11282021

Lindgren, A.; Bungard, D.; Pierce, M.; Xie, J.; Vershon, A. and Winter, E. (2000): The pachytene checkpoint in Saccharomyces cerevisiae requires the Sum1 transcriptional repressor, Embo J 19 [23], pp.6489-97. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11101521

Lipford, J. R. and Bell, S. P. (2001): Nucleosomes positioned by ORC facilitate the initiation of DNA replication, Mol Cell 7 [1], pp.21-30. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11172708

Lippman, Z.; Gendrel, A. V.; Black, M.; Vaughn, M. W.; Dedhia, N.; McCombie, W. R.; Lavine, K.; Mittal, V.; May, B.; Kasschau, K. D.; Carrington, J. C.; Doerge, R. W.; Colot, V. and Martienssen, R. (2004): Role of transposable elements in heterochromatin and epigenetic control, Nature 430 [6998], pp.471-6. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15269773

Little, R. D.; Platt, T. H. and Schildkraut, C. L. (1993): Initiation and termination of DNA replication in human rRNA genes, Mol Cell Biol 13 [10], pp.6600-13. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8413256

Livi, G. P.; Hicks, J. B. and Klar, A. J. (1990): The sum1-1 mutation affects silent mating-type gene transcription in Saccharomyces cerevisiae, Mol Cell Biol 10 [1], pp.409-12. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=2403645

Lo, W. S.; Duggan, L.; Emre, N. C.; Belotserkovskya, R.; Lane, W. S.; Shiekhattar, R. and Berger, S. L. (2001): Snf1--a histone kinase that works in concert with the histone acetyltransferase Gcn5 to regulate transcription, Science 293 [5532], pp.1142-6. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11498592

Loo, S.; Fox, C. A.; Rine, J.; Kobayashi, R.; Stillman, B. and Bell, S. (1995): The origin recognition complex in silencing, cell cycle progression, and DNA replication, Mol Biol Cell 6 [6], pp.741-56. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=7579692

Luger, K.; Mader, A. W.; Richmond, R. K.; Sargent, D. F. and Richmond, T. J. (1997): Crystal structure of the nucleosome core particle at 2.8 A resolution, Nature 389 [6648], pp.251-60. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9305837

Luo, J.; Nikolaev, A. Y.; Imai, S.; Chen, D.; Su, F.; Shiloh, A.; Guarente, L. and Gu, W. (2001): Negative control of p53 by Sir2alpha promotes cell survival under stress, Cell 107 [2], pp.137-48. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11672522

Luo, K.; Vega-Palas, M. A. and Grunstein, M. (2002): Rap1-Sir4 binding independent of other Sir, yKu, or histone interactions initiates the assembly of telomeric heterochromatin in yeast, Genes Dev 16 [12], pp.1528-39. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12080091

Mahoney, D. J. and Broach, J. R. (1989): The HML mating-type cassette of Saccharomyces cerevisiae is regulated by two separate but functionally equivalent silencers, Mol Cell Biol 9 [11], pp.4621-30. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=2689860

Mahoney, D. J.; Marquardt, R.; Shei, G. J.; Rose, A. B. and Broach, J. R. (1991): Mutations in the HML E silencer of Saccharomyces cerevisiae yield metastable inheritance of transcriptional repression, Genes Dev 5 [4], pp.605-15. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=2010086

Marahrens, Y. and Stillman, B. (1992): A yeast chromosomal origin of DNA replication defined by multiple functional elements, Science 255 [5046], pp.817-23. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1536007

Matsumoto, K. and Ishimi, Y. (1994): Single-stranded-DNA-binding protein-dependent DNA unwinding of the yeast ARS1 region, Mol Cell Biol 14 [7], pp.4624-32. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8007967

McCord, R.; Pierce, M.; Xie, J.; Wonkatal, S.; Mickel, C. and Vershon, A. K. (2003): Rfm1, a novel tethering factor required to recruit the Hst1 histone deacetylase for repression of middle sporulation genes, Mol Cell Biol 23 [6], pp.2009-16. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12612074

Mishra, K. and Shore, D. (1999): Yeast Ku protein plays a direct role in telomeric silencing and counteracts inhibition by rif proteins, Curr Biol 9 [19], pp.1123-6. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10531008

Mitchell, A.P. (1994): Control of meiotic gene expression in Saccharomyces cerevisiae, Microbiol Rev 58, pp.56-70.

Miyake, T.; Loch, C. M. and Li, R. (2002): Identification of a multifunctional domain in autonomously replicating sequence-binding factor 1 required for transcriptional activation, DNA replication, and gene silencing, Mol Cell Biol 22 [2], pp.505-16. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11756546

Muller, H.J. (1930): Types of visible variations induced by X-rays in Drosophila, J Genet 22, pp.299-335.

Ng, H. H.; Xu, R. M.; Zhang, Y. and Struhl, K. (2002): Ubiquitination of histone H2B by Rad6 is required for efficient Dot1-mediated methylation of histone H3 lysine 79, J Biol Chem 277 [38], pp.34655-7. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12167634

Nguyen, V. Q.; Co, C. and Li, J. J. (2001): Cyclin-dependent kinases prevent DNA re-replication through multiple mechanisms, Nature 411 [6841], pp.1068-73. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11429609

Oki, M.; Valenzuela, L.; Chiba, T.; Ito, T. and Kamakaka, R. T. (2004): Barrier proteins remodel and modify chromatin to restrict silenced domains, Mol Cell Biol 24 [5], pp.1956-67. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14966276

Okuno, Y.; Satoh, H.; Sekiguchi, M. and Masukata, H. (1999): Clustered adenine/thymine stretches are essential for function of a fission yeast replication origin, Mol Cell Biol 19 [10], pp.6699-709. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10490609

Ozsarac, N.; Straffon, M. J.; Dalton, H. E. and Dawes, I. W. (1997): Regulation of gene expression during meiosis in Saccharomyces cerevisiae: SPR3 is controlled by both ABFI and a new sporulation control element, Mol Cell Biol 17 [3], pp.1152-9. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9032242

Pak, D. T.; Pflumm, M.; Chesnokov, I.; Huang, D. W.; Kellum, R.; Marr, J.; Romanowski, P. and Botchan, M. R. (1997): Association of the origin recognition complex with heterochromatin and HP1 in higher eukaryotes, Cell 91 [3], pp.311-23. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9363940

Pak, J. and Segall, J. (2002): Regulation of the premiddle and middle phases of expression of the NDT80 gene during sporulation of Saccharomyces cerevisiae, Mol Cell Biol 22 [18], pp.6417-29. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12192041

Pak, J. and Segall, J. (2002): Role of Ndt80, Sum1, and Swe1 as targets of the meiotic recombination checkpoint that control exit from pachytene and spore formation in Saccharomyces cerevisiae, Mol Cell Biol 22 [18], pp.6430-40. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12192042

Pappas, D. L., Jr.; Frisch, R. and Weinreich, M. (2004): The NAD(+)-dependent Sir2p histone deacetylase is a negative regulator of chromosomal DNA replication, Genes Dev 18 [7], pp.769-81. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15082529

Paulson, J. R. and Laemmli, U. K. (1977): The structure of histone-depleted metaphase chromosomes, Cell 12 [3], pp.817-28. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=922894

Perrod, S.; Cockell, M. M.; Laroche, T.; Renauld, H.; Ducrest, A. L.; Bonnard, C. and Gasser, S. M. (2001): A cytosolic NAD-dependent deacetylase, Hst2p, can modulate nucleolar and telomeric silencing in yeast, Embo J 20 [1-2], pp.197-209. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11226170

Perrod, S. and Gasser, S. M. (2003): Long-range silencing and position effects at telomeres and centromeres: parallels and differences, Cell Mol Life Sci 60 [11], pp.2303-18. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14625677

Peters, A. H.; O'Carroll, D.; Scherthan, H.; Mechtler, K.; Sauer, S.; Schofer, C.; Weipoltshammer, K.; Pagani, M.; Lachner, M.; Kohlmaier, A.; Opravil, S.; Doyle, M.; Sibilia, M. and Jenuwein, T. (2001): Loss of the Suv39h histone methyltransferases impairs mammalian heterochromatin and genome stability, Cell 107 [3], pp.323-37. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11701123

Petes, T. D. and Botstein, D. (1977): Simple Mendelian inheritance of the reiterated ribosomal DNA of yeast, Proc Natl Acad Sci U S A 74 [11], pp.5091-5. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=337310

Pierce, M.; Benjamin, K. R.; Montano, S. P.; Georgiadis, M. M.; Winter, E. and Vershon, A. K. (2003): Sum1 and Ndt80 proteins compete for binding to middle sporulation element sequences that control meiotic gene expression, Mol Cell Biol 23 [14], pp.4814-25. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12832469

Pijnappel, W. W.; Schaft, D.; Roguev, A.; Shevchenko, A.; Tekotte, H.; Wilm, M.; Rigaut, G.; Seraphin, B.; Aasland, R. and Stewart, A. F. (2001): The S. cerevisiae SET3 complex includes two histone deacetylases, Hos2 and Hst1, and is a meiotic-specific repressor of the sporulation gene program, Genes Dev 15 [22], pp.2991-3004. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11711434

Planta, R. J.; Goncalves, P. M. and Mager, W. H. (1995): Global regulators of ribosome biosynthesis in yeast, Biochem Cell Biol 73 [11-12], pp.825-34. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8721998

Pray-Grant, M. G.; Daniel, J. A.; Schieltz, D.; Yates, J. R., 3rd and Grant, P. A. (2005): Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation, Nature 433 [7024], pp.434-8. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15647753

Raghuraman, M. K.; Winzeler, E. A.; Collingwood, D.; Hunt, S.; Wodicka, L.; Conway, A.; Lockhart, D. J.; Davis, R. W.; Brewer, B. J. and Fangman, W. L. (2001): Replication dynamics of the yeast genome, Science 294 [5540], pp.115-21. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11588253

Raychaudhuri, S.; Byers, R.; Upton, T. and Eisenberg, S. (1997): Functional analysis of a replication origin from Saccharomyces cerevisiae: identification of a new replication enhancer, Nucleic Acids Res 25 [24], pp.5057-64. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9396816

Rhode, P. R.; Elsasser, S. and Campbell, J. L. (1992): Role of multifunctional autonomously replicating sequence binding factor 1 in the initiation of DNA replication and transcriptional control in Saccharomyces cerevisiae, Mol Cell Biol 12 [3], pp.1064-77. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1545789

Rine, J. and Herskowitz, I. (1987): Four genes responsible for a position effect on expression from HML and HMR in Saccharomyces cerevisiae, Genetics 116 [1], pp.9-22. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=3297920

Rivier, D. H. and Rine, J. (1992): An origin of DNA replication and a transcription silencer require a common element, Science 256 [5057], pp.659-63. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1585179

Robert, F.; Pokholok, D. K.; Hannett, N. M.; Rinaldi, N. J.; Chandy, M.; Rolfe, A.; Workman, J. L.; Gifford, D. K. and Young, R. A. (2004): Global position and recruitment of HATs and HDACs in the yeast genome, Mol Cell 16 [2], pp.199-209. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15494307

Roy, A.; Exinger, F. and Losson, R. (1990): cis- and trans-acting regulatory elements of the yeast URA3 promoter, Mol Cell Biol 10 [10], pp.5257-70. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=2204810

Rusche, L. N.; Kirchmaier, A. L. and Rine, J. (2002): Ordered nucleation and spreading of silenced chromatin in Saccharomyces cerevisiae, Mol Biol Cell 13 [7], pp.2207-22. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12134062

Rusche, L. N. and Rine, J. (2001): Conversion of a gene-specific repressor to a regional silencer, Genes Dev 15 [8], pp.955-67. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11316790

Saha, A.; Wittmeyer, J. and Cairns, B. R. (2002): Chromatin remodeling by RSC involves ATP-dependent DNA translocation, Genes Dev 16 [16], pp.2120-34. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12183366

Sambrook, J; Fritsch, E.F. and Maniatis, T. (1989): Molecular Cloning. A Laboratory Manual, Nolan, C., Ed, Cold Spring Harbor Laboratory Press, New York.

Sasaki, T.; Sawado, T.; Yamaguchi, M. and Shinomiya, T. (1999): Specification of regions of DNA replication initiation during embryogenesis in the 65-kilobase DNApolalpha-dE2F locus of Drosophila melanogaster, Mol Cell Biol 19 [1], pp.547-55. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9858578

Sharma, K.; Weinberger, M. and Huberman, J. A. (2001): Roles for internal and flanking sequences in regulating the activity of mating-type-silencer-associated replication origins in Saccharomyces cerevisiae, Genetics 159 [1], pp.35-45. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11560885

Shei, G. J. and Broach, J. R. (1995): Yeast silencers can act as orientation-dependent gene inactivation centers that respond to environmental signals, Mol Cell Biol 15 [7], pp.3496-506. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=7791756

Sherman, F. (1991): Getting started with yeast, Methods Enzymol 194, pp.3-21. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=2005794

Shi, Y.; Lan, F.; Matson, C.; Mulligan, P.; Whetstine, J. R.; Cole, P. A. and Casero, R. A. (2004): Histone demethylation mediated by the nuclear amine oxidase homolog LSD1, Cell 119 [7], pp.941-53. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15620353

Shore, D. and Nasmyth, K. (1987): Purification and cloning of a DNA binding protein from yeast that binds to both silencer and activator elements, Cell 51 [5], pp.721-32. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=3315231

Sif, S. (2004): ATP-dependent nucleosome remodeling complexes: enzymes tailored to deal with chromatin, J Cell Biochem 91 [6], pp.1087-98. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15048866

Simpson, R. T. (1990): Nucleosome positioning can affect the function of a cis-acting DNA element in vivo, Nature 343 [6256], pp.387-9. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=2405281

Smith, J. S. and Boeke, J. D. (1997): An unusual form of transcriptional silencing in yeast ribosomal DNA, Genes Dev 11 [2], pp.241-54. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9009206

Stavenhagen, J. B. and Zakian, V. A. (1994): Internal tracts of telomeric DNA act as silencers in Saccharomyces cerevisiae, Genes Dev 8 [12], pp.1411-22. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=7926741

Stevenson, J. B. and Gottschling, D. E. (1999): Telomeric chromatin modulates replication timing near chromosome ends, Genes Dev 13 [2], pp.146-51. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9925638

Stinchcomb, D. T.; Struhl, K. and Davis, R. W. (1979): Isolation and characterisation of a yeast chromosomal replicator, Nature 282 [5734], pp.39-43. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=388229

Strahl-Bolsinger, S.; Hecht, A.; Luo, K. and Grunstein, M. (1997): SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast, Genes Dev 11 [1], pp.83-93. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9000052

Straight, A. F.; Shou, W.; Dowd, G. J.; Turck, C. W.; Deshaies, R. J.; Johnson, A. D. and Moazed, D. (1999): Net1, a Sir2-associated nucleolar protein required for rDNA silencing and nucleolar integrity, Cell 97 [2], pp.245-56. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10219245

Suka, N.; Luo, K. and Grunstein, M. (2002): Sir2p and Sas2p opposingly regulate acetylation of yeast histone H4 lysine16 and spreading of heterochromatin, Nat Genet 32 [3], pp.378-83. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12379856

Suter, B.; Tong, A.; Chang, M.; Yu, L.; Brown, G. W.; Boone, C. and Rine, J. (2004): The origin recognition complex links replication, sister chromatid cohesion and transcriptional silencing in Saccharomyces cerevisiae, Genetics 167 [2], pp.579-91. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15238513

Sutton, A.; Heller, R. C.; Landry, J.; Choy, J. S.; Sirko, A. and Sternglanz, R. (2001): A novel form of transcriptional silencing by Sum1-1 requires Hst1 and the origin recognition complex, Mol Cell Biol 21 [10], pp.3514-22. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11313477

Takayama, Y.; Kamimura, Y.; Okawa, M.; Muramatsu, S.; Sugino, A. and Araki, H. (2003): GINS, a novel multiprotein complex required for chromosomal DNA replication in budding yeast, Genes Dev 17 [9], pp.1153-65. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12730134

Theis, J. F. and Newlon, C. S. (1997): The ARS309 chromosomal replicator of Saccharomyces cerevisiae depends on an exceptional ARS consensus sequence, Proc Natl Acad Sci U S A 94 [20], pp.10786-91. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9380711

Thoma, F.; Bergman, L. W. and Simpson, R. T. (1984): Nuclease digestion of circular TRP1ARS1 chromatin reveals positioned nucleosomes separated by nuclease-sensitive regions, J Mol Biol 177 [4], pp.715-33. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=6384525

Toledo, F.; Baron, B.; Fernandez, M. A.; Lachages, A. M.; Mayau, V.; Buttin, G. and Debatisse, M. (1998): oriGNAI3: a narrow zone of preferential replication initiation in mammalian cells identified by 2D gel and competitive PCR replicon mapping techniques, Nucleic Acids Res 26 [10], pp.2313-21. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9580680

Triolo, T. and Sternglanz, R. (1996): Role of interactions between the origin recognition complex and SIR1 in transcriptional silencing, Nature 381 [6579], pp.251-3. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8622770

Venditti, P.; Costanzo, G.; Negri, R. and Camilloni, G. (1994): ABFI contributes to the chromatin organization of Saccharomyces cerevisiae ARS1 B-domain, Biochim Biophys Acta 1219 [3], pp.677-89. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=7948025

Vogelauer, M.; Rubbi, L.; Lucas, I.; Brewer, B. J. and Grunstein, M. (2002): Histone acetylation regulates the time of replication origin firing, Mol Cell 10 [5], pp.1223-33. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12453428

Vogelauer, M.; Wu, J.; Suka, N. and Grunstein, M. (2000): Global histone acetylation and deacetylation in yeast, Nature 408 [6811], pp.495-8. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11100734

Wach, A.; Brachat, A.; Alberti-Segui, C.; Rebischung, C. and Philippsen, P. (1997): Heterologous HIS3 marker and GFP reporter modules for PCR-targeting in Saccharomyces cerevisiae, Yeast 13 [11], pp.1065-75. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9290211

Wach, A.; Brachat, A.; Pohlmann, R. and Philippsen, P. (1994): New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae, Yeast 10 [13], pp.1793-808. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=7747518

Wakimoto, B. T. (1998): Beyond the nucleosome: epigenetic aspects of position-effect variegation in Drosophila, Cell 93 [3], pp.321-4. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9590165

Walsh, C. P.; Chaillet, J. R. and Bestor, T. H. (1998): Transcription of IAP endogenous retroviruses is constrained by cytosine methylation, Nat Genet 20 [2], pp.116-7. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9771701

Wang, Y.; Wysocka, J.; Sayegh, J.; Lee, Y. H.; Perlin, J. R.; Leonelli, L.; Sonbuchner, L. S.; McDonald, C. H.; Cook, R. G.; Dou, Y.; Roeder, R. G.; Clarke, S.; Stallcup, M. R.; Allis, C. D. and Coonrod, S. A. (2004): Human PAD4 regulates histone arginine methylation levels via demethylimination, Science 306 [5694], pp.279-83. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15345777

Weinreich, M. and Stillman, B. (1999): Cdc7p-Dbf4p kinase binds to chromatin during S phase and is regulated by both the APC and the RAD53 checkpoint pathway, Embo J 18 [19], pp.5334-46. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10508166

West, A. G. and Sharrocks, A. D. (1999): MADS-box transcription factors adopt alternative mechanisms for bending DNA, J Mol Biol 286 [5], pp.1311-23. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10064699

Whitehouse, I.; Flaus, A.; Cairns, B. R.; White, M. F.; Workman, J. L. and Owen-Hughes, T. (1999): Nucleosome mobilization catalysed by the yeast SWI/SNF complex, Nature 400 [6746], pp.784-7. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10466730

Wilmes, G. M. and Bell, S. P. (2002): The B2 element of the Saccharomyces cerevisiae ARS1 origin of replication requires specific sequences to facilitate pre-RC formation, Proc Natl Acad Sci U S A 99 [1], pp.101-6. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11756674

Workman, J. L.; Taylor, I. C. and Kingston, R. E. (1991): Activation domains of stably bound GAL4 derivatives alleviate repression of promoters by nucleosomes, Cell 64 [3], pp.533-44. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1991320

Wright, J. H.; Gottschling, D. E. and Zakian, V. A. (1992): Saccharomyces telomeres assume a non-nucleosomal chromatin structure, Genes Dev 6 [2], pp.197-210. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1737616

Wyrick, J. J.; Aparicio, J. G.; Chen, T.; Barnett, J. D.; Jennings, E. G.; Young, R. A.; Bell, S. P. and Aparicio, O. M. (2001): Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins, Science 294 [5550], pp.2357-60. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11743203

Xie, J.; Pierce, M.; Gailus-Durner, V.; Wagner, M.; Winter, E. and Vershon, A. K. (1999): Sum1 and Hst1 repress middle sporulation-specific gene expression during mitosis in Saccharomyces cerevisiae, Embo J 18 [22], pp.6448-54. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10562556

Zhimulev, I. F.; Belyaeva, E. S.; Semeshin, V. F.; Koryakov, D. E.; Demakov, S. A.; Demakova, O. V.; Pokholkova, G. V. and Andreyeva, E. N. (2004): Polytene chromosomes: 70 years of genetic research, Int Rev Cytol 241, pp.203-75. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15548421

Zhou, J.; Chau, C. M.; Deng, Z.; Shiekhattar, R.; Spindler, M. P.; Schepers, A. and Lieberman, P. M. (2005): Cell cycle regulation of chromatin at an origin of DNA replication, Embo J. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15775975

Zou, L.; Mitchell, J. and Stillman, B. (1997): CDC45, a novel yeast gene that functions with the origin recognition complex and Mcm proteins in initiation of DNA replication, Mol Cell Biol 17 [2], pp.553-63. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9001208

Zou, L. and Stillman, B. (2000): Assembly of a complex containing Cdc45p, replication protein A, and Mcm2p at replication origins controlled by S-phase cyclin-dependent kinases and Cdc7p-Dbf4p kinase, Mol Cell Biol 20 [9], pp.3086-96. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10757793