- edoc-Server Home
- Browsing by Author
Browsing by Author "Klipp, Edda"
Now showing items 1-16 of 16
-
2023-01-26ZeitschriftenartikelA dynamical stochastic model of yeast translation across the cell cycle Seeger, Martin; Flöttmann, Max; Klipp, EddaTranslation is a central step in gene expression, however its quantitative and time-resolved regulation is poorly understood. We developed a discrete, stochastic model for protein translation in S. cerevisiae in a ...
-
2012-06-27ZeitschriftenartikelA Stochastic Model of Epigenetic Dynamics in Somatic Cell Reprogramming Flöttmann, Max; Scharp, Till; Klipp, EddaSomatic cell reprogramming has dramatically changed stem cell research in recent years. The high pace of new findings in the field and an ever increasing amount of data from new high throughput techniques make it challenging ...
-
2021-01-31ZeitschriftenartikelAcclimation in plants – the Green Hub consortium Kleine, Tatjana; Nägele, Thomas; Neuhaus, H. Ekkehard; Schmitz‐Linneweber, Christian; Fernie, Alisdair R.; Geigenberger, Peter; Grimm, Bernhard; Kaufmann, Kerstin; Klipp, Edda; Meurer, Jörg; Möhlmann, Torsten; Mühlhaus, Timo; Naranjo, Belén; Nickelsen, Joerg; Richter, Andreas;Acclimation is the capacity to adapt to environmental changes within the lifetime of an individual. This ability allows plants to cope with the continuous variation in ambient conditions to which they are exposed as sessile ...
-
2012-07-25ZeitschriftenartikelCell-to-Cell Communication Circuits Hoffman-Sommer, Marta; Supady, Adriana; Klipp, EddaOne of the goals in the field of synthetic biology is the construction of cellular computation devices that could function in a manner similar to electronic circuits. To this end, attempts are made to create biological ...
-
2020-01-18ZeitschriftenartikelChemical Reaction Networks Possess Intrinsic, Temperature-Dependent Functionality Adler, Stephan O.; Klipp, EddaTemperature influences the life of many organisms in various ways. A great number of organisms live under conditions where their ability to adapt to changes in temperature can be vital and largely determines their fitness. ...
-
2022-05-23ZeitschriftenartikelControl of COVID-19 Outbreaks under Stochastic Community Dynamics, Bimodality, or Limited Vaccination Goldenbogen, Björn; Adler, Stephan O.; Bodeit, Oliver; Wodke, Judith A. H.; Escalera, Ximena; Korman, Aviv; Krantz, Maria; Bonn, Lasse; Morán-Torres, Rafael; Haffner, Johanna E. L.; Karnetzki, Maxim; Maintz, Ivo; Mallis, Lisa; Prawitz, Hannah; Segelitz, Patrick S.;Reaching population immunity against COVID-19 is proving difficult even in countries with high vaccination levels. Thus, it is critical to identify limits of control and effective measures against future outbreaks. The ...
-
2021-09-03ZeitschriftenartikelData Management and Modeling in Plant Biology Krantz, Maria; Zimmer, David; Adler, Stephan O.; Kitashova, Anastasia; Klipp, Edda; Mühlhaus, Timo; Nägele, ThomasThe study of plant-environment interactions is a multidisciplinary research field. With the emergence of quantitative large-scale and high-throughput techniques, amount and dimensionality of experimental data have strongly ...
-
2016-01-06ZeitschriftenartikelDosage and Dose Schedule Screening of Drug Combinations in Agent-Based Models Reveals Hidden Synergies Barros de Andrade e Sousa, Lisa; Kühn, Clemens; Tyc, Katarzyna M.; Klipp, EddaThe fungus Candida albicans is the most common causative agent of human fungal infections and better drugs or drug combination strategies are urgently needed. Here, we present an agent-based model of the interplay of C. ...
-
2013-07-12ZeitschriftenartikelFkh1 and Fkh2 associate with Sir2 to control CLB2 transcription under normal and oxidative stress conditions Linke, Christian; Klipp, Edda; Lehrach, Hans; Barberis, Matteo; Krobitsch, SylviaThe Forkhead (Fkh) box family of transcription factors is evolutionary conserved from yeast to higher eukaryotes and its members are involved in many physiological processes including metabolism, DNA repair, cell cycle, ...
-
2015-11-23ZeitschriftenartikelInfluence of cell shape, inhomogeneities and diffusion barriers in cell polarization models Giese, Wolfgang; Eigel, Martin; Westerheide, Sebastian; Engwer, Christian; Klipp, EddaIn silico experiments bear the potential for further understanding of biological transport processes by allowing a systematic modification of any spatial property and providing immediate simulation results. Cell polarization ...
-
2019-02-14ZeitschriftenartikelInformation Thermodynamics for Time Series of Signal-Response Models Auconi, Andrea; GIANSANTI, ANDREA; Klipp, EddaAbstract: The entropy production in stochastic dynamical systems is linked to the structure of their causal representation in terms of Bayesian networks. Such a connection was formalized for bipartite (or multipartite) ...
-
2022-11-14ZeitschriftenartikelLimitation of sucrose biosynthesis shapes carbon partitioning during plant cold acclimation Kitashova, Anastasia; Adler, Stephan O.; Richter, Andreas Sven; Eberlein, Svenja; Dziubek, Dejan; Klipp, Edda; Nägele, ThomasCold acclimation is a multigenic process by which many plant species increase their freezing tolerance. Stabilization of photosynthesis and carbohydrate metabolism plays a crucial role in cold acclimation. To study regulation ...
-
2015-11-25ZeitschriftenartikelMicro- and nano-tubules built from loosely and tightly rolled up thin sheets Losensky, Luisa; Goldenbogen, Björn; Holland, Gudrun; Laue, Michael; Petran, Anca; Liebscher, Jürgen; Scheidt, Holger; Vogel, Alexander; Huster, Daniel; Klipp, Edda; Arbuzova, AnnaTubular structures built from amphiphilic molecules are of interest for nano-sensing, drug delivery, and structuring of oils. In this study, we characterized the tubules built in aqueous suspensions of a cholesteryl ...
-
2021-04-23ZeitschriftenartikelModeling indicates degradation of mRNA and protein as a potential regulation mechanisms during cold acclimation Krantz, Maria; Legen, Julia; Gao, Yang; Zoschke, Reimo; Schmitz-Linneweber, Christian; Klipp, EddaPlants are constantly exposed to temperature fluctuations, which have direct effects on all cellular reactions because temperature influences reaction likelihood and speed. Chloroplasts are crucial to temperature acclimation ...
-
2021-06-30ZeitschriftenartikelShapes of cell signaling Linding, Rune; Klipp, EddaCell signaling is a complex process organized in time and space. Signal transduction is constantly modulated by cell-intrinsic and cell-extrinsic input cues and the resulting phenotypic responses such as morphological can ...
-
2021-07-15ZeitschriftenartikelSperm migration in the genital tract—In silico experiments identify key factors for reproductive success Diemer, Jorin; Hahn, Jens; Goldenbogen, Björn; Müller, Karin; Klipp, EddaSperm migration in the female genital tract controls sperm selection and, therefore, reproductive success as male gametes are conditioned for fertilization while their number is dramatically reduced. Mechanisms underlying ...