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2023-10-18Zeitschriftenartikel DOI: 10.18452/28387
Unmapped short reads from whole-genome sequencing indicate potential infectious pathogens in German Black Pied cattle
dc.contributor.authorNeumann, Guilherme B.
dc.contributor.authorKorkuć, Paula
dc.contributor.authorReißmann, Monika
dc.contributor.authorWolf, Manuel J.
dc.contributor.authorMay, Katharina
dc.contributor.authorKönig, Sven
dc.contributor.authorBrockmann, Gudrun A
dc.date.accessioned2024-03-12T12:47:03Z
dc.date.available2024-03-12T12:47:03Z
dc.date.issued2023-10-18none
dc.identifier.urihttp://edoc.hu-berlin.de/18452/29027
dc.descriptionThe article processing charge was funded by the Open Access Publication Fund of Humboldt-Universität zu Berlin.none
dc.description.abstractWhen resequencing animal genomes, some short reads cannot be mapped to the reference genome and are usually discarded. In this study, unmapped reads from 302 German Black Pied cattle were analyzed to identify potential pathogenic DNA. These unmapped reads were assembled and blasted against NCBI’s database to identify bacterial and viral sequences. The results provided evidence for the presence of pathogens. We found sequences of Bovine parvovirus 3 and Mycoplasma species. These findings emphasize the information content of unmapped reads for gaining insight into bacterial and viral infections, which is important for veterinarians and epidemiologists.eng
dc.language.isoengnone
dc.publisherHumboldt-Universität zu Berlin
dc.rights(CC BY 4.0) Attribution 4.0 Internationalger
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/
dc.subjectShort-read sequencingeng
dc.subjectillumina sequencingeng
dc.subjectMycoplasmaeng
dc.subjectDSNeng
dc.subjectDeutsches Schwarzbuntes Niederungsrindeng
dc.subjectBovine parvovirus 3eng
dc.subject.ddc590none
dc.titleUnmapped short reads from whole-genome sequencing indicate potential infectious pathogens in German Black Pied cattlenone
dc.typearticle
dc.identifier.urnurn:nbn:de:kobv:11-110-18452/29027-7
dc.identifier.doihttp://dx.doi.org/10.18452/28387
dc.type.versionpublishedVersionnone
local.edoc.pages7none
local.edoc.type-nameZeitschriftenartikel
local.edoc.container-typeperiodical
local.edoc.container-type-nameZeitschrift
local.edoc.container-year2023none
dc.description.versionPeer Reviewednone
dc.identifier.eissn1297-9716
dcterms.bibliographicCitation.doi10.1186/s13567-023-01227-0
dcterms.bibliographicCitation.journaltitleVeterinary researchnone
dcterms.bibliographicCitation.volume54none
dcterms.bibliographicCitation.articlenumber95none
dcterms.bibliographicCitation.originalpublishernameBioMed Centralnone
dcterms.bibliographicCitation.originalpublisherplaceLondonnone
bua.departmentLebenswissenschaftliche Fakultätnone

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